BEAST 2.6.3¶
Table of Contents
Basic information¶
- Official Website: http://www.beast2.org/
- License: GNU LESSER GENERAL PUBLIC LICENSE Version 2.1
- Installed on: Apolo II
- Installation date: 23/02/2021
Tested on (Requirements)¶
- OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
- Dependencies:
- Java JDK - 1.8.0 u112
Installation¶
Download the desired version of the software (Source code - tar.gz)
cd /home/blopezp/Desktop/BEAST wget https://github.com/CompEvol/beast2/releases/download/v2.6.3/BEAST.v2.6.3.Linux.tgz tar -zxvf BEAST.v2.6.3.Linux.tgz 2. After unpacking blast, continue with the following steps to finish the installation:
After unpacking blast, continue with the following steps to finish the installation:
cd beast sudo mkdir -p /share/apps/beast2/2.6.3 sudo cp -r bin/ lib/ templates / examples/ images/ /sahre/apps/beast2/2.6.3 ls -p /share/apps/beast2/2.6.3
Module¶
#%Module1.0##################################################################### ## ## module beast2/2.6.3 ## ## /share/apps/modules/beast2/2.6.3 Written by Bryan López Parra ## proc ModulesHelp { } { puts stderr "\tbeast2/2.6.3 - sets the Environment for BEAST2 \ \n\tin the share directory /share/apps/beast2/2.6.3\n" } module-whatis "\n\n\tSets the environment for using beast2\n" # for Tcl script use only set topdir /share/apps/beast2/2.6.3 set version 2.6.3 set sys linux-x86_64 conflict beast2 module load java/jdk-1.8.0_112 prepend-path PATH $topdir/bin prepend-path CLASSPATH $topdir/lib/beast.jar prepend-path CLASSPATH $topdir/lib/beast.src.jar prepend-path CLASSPATH $topdir/lib/DensiTree.jar prepend-path CLASSPATH $topdir/lib/launcher.jar
Slurm template¶
#!/bin/bash #SBATCH --job-name=BEAST2-2.6.0-case #SBATCH --partition=batch #SBATCH --nodes=1 #SBATCH --ntasks=8 #SBATCH --time=1:00:00 module load beast2/2.6.3 beast -threads $SLURM_NTASKS testStarBeast.xml