BEAST 2.4.5¶
Table of Contents
Basic information¶
- Official Website: http://www.beast2.org/
- License: GNU LESSER GENERAL PUBLIC LICENSE Version 2.1
- Installed on: Apolo II and Cronos
- Installation date: 07/02/2017
Tested on (Requirements)¶
- OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
- Dependencies:
- Java JDK - 1.8.0 u112
Installation¶
Download the desired version of the software (Source code - tar.gz)
cd /home/mgomezzul/apps/bpp/intel wget https://github.com/CompEvol/beast2/releases/download/v2.4.5/BEAST.v2.4.5.Linux.tgz tar -zxvf BEAST.v2.4.5.Linux.tgz
After unpacking blast, continue with the following steps to finish the installation:
cd beast sudo mkdir -p /share/apps/beast2/2.4.5 sudo cp -r bin/ lib/ templates/ examples/ images/ /share/apps/beast2/2.4.5
Module¶
#%Module1.0##################################################################### ## ## module beast2/2.4.5 ## ## /share/apps/modules/beast2/2.4.5 Written by Juan David Pineda-Cárdenas ## proc ModulesHelp { } { puts stderr "\tbeast2/2.4.5 - sets the Environment for BEAST2 \ \n\tin the share directory /share/apps/beast2/2.4.5\n" } module-whatis "\n\n\tSets the environment for using beast2\n" # for Tcl script use only set topdir /share/apps/beast2/2.4.5 set version 2.4.5 set sys linux-x86_64 conflict beast2 module load java/jdk-1.8.0_112 prepend-path PATH $topdir/bin prepend-path CLASSPATH $topdir/lib/beast.jar prepend-path CLASSPATH $topdir/lib/beast.src.jar prepend-path CLASSPATH $topdir/lib/DensiTree.jar prepend-path CLASSPATH $topdir/lib/launcher.jar