Kraken

[1] Kraken 2 is the newest version of Kraken, a taxonomic classification system using

exact k-mer matches to achieve high accuracy and fast classification speeds. This classifier matches each k-mer within a query sequence to the lowest common ancestor (LCA) of all genomes containing the given k-mer. The k-mer assignments inform the classification algorithm.

Versions

• Kraken 2.1.0

[1]

https://ccb.jhu.edu/software/kraken2/