GATK4

GATK [1], pronounced “Gee Ay Tee Kay” (not “Gat-Kay”), stands for GenomeAnalysisToolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. The tools can be used individually or chained together into complete workflows. We provide end-to-end workflows, called GATK Best Practices, tailored for specific use cases.

Versions

• GATK4-4.1.0.0

[1]	Broad Institute. (2019). GATK | Quick Start Guide. Retrieved 7 October 2019, from https://software.broadinstitute.org/gatk/documentation/quickstart