Scientific Applications

To find out what is the procedure to build, configure and use the installed scientific applications on our supercomputer (Apolo II and Cronos) you can review the following entries:

• ABySS
• ANSYS
• ARCS
• AutoDock
• autoDock_Vina
• BayeScan
• BEAST2
• BLAST
• BLAT
• bowtie2
• Bpp
• BWA
• CDO
• CHARMM
• Calculix
• Clustalw
• crystal
• Curl
• Cufflinks
• delft3D
• DL_POLY_Classic
• ECL
• EDGE-pro
• elmer
• fastQC
• Flye
• gamess
• garli
• GATK4
• GROMACS
• GROMACS-LS
• gurobi
• intel
• IQ-TREE
• Kraken
• IOAPI
• LAMMPS
• leDock
• lePro
• LINKS
• Lotos Euros
• MAFFT
• MDSTRESS-LIB
• MedeA
• Mothur
• MPICH
• mrBayes
• MUSCLE
• NAMD
• ncl
• NCAR NCL
• OpenFOAM
• OpenQuake
• OpenSees
• ORCA
• Openstructure
• parallel
• ParGenes
• Partition Finder
• PhyloNet
• PICRUSt2
• Pigz
• Plumed
• Prank
• Prinseq-lite
• Pteros
• pyrad
• QE
• Qiime2
• RACKET
• RAxML
• rDock
• REPET
• SAMtools
• SMOKE
• Google Sparsehash
• stacks
• TensorFlow
• Tigmint
• TopHat
• Trans-ABySS
• Transrate
• trimmomatic
• Trinity
• USPEX
• VASP
• VMD
• vsearch
• Wps
• WRF
• Makedepf90
• GEANT4
• ROOT