EDGE-pro
EDGE-pro [1] (Estimated Degree of Gene Expression in PROkaryotes) is an efficient software system to estimate gene expression levels in prokaryotic genomes from RNA-seq data.
EDGE-pro uses Bowtie2 for alignment and then estimates expression directly from the alignment results.
EDGE-pro is distributed as a single package containing all the necessary files, including manual, source code [2] , executables and Perl scripts.
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