EDGE-pro¶
EDGE-pro [1] (Estimated Degree of Gene Expression in PROkaryotes) is an efficient software system to estimate gene expression levels in prokaryotic genomes from RNA-seq data.
EDGE-pro uses Bowtie2 for alignment and then estimates expression directly from the alignment results.
EDGE-pro is distributed as a single package containing all the necessary files, including manual, source code [2] , executables and Perl scripts.
Versions
References¶
| [1] | T. Magoc, D. Wood, and S.L. Salzberg. (2013, May 31). EDGE-pro Official Page. Retrieved 09:52, January 16, 2019 from http://ccb.jhu.edu/software/EDGE-pro/ . |
| [2] | T. Magoc, D. Wood, and S.L. Salzberg. EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes. Evolutionary Bioinformatics vol.9, pp.127-136, 2013 |