Table of Contents

• Stacks 1.44
  • Dependencies
  • Installation
  • Module
  • Use mode
  • References
  • Author

Stacks 1.44

• Installation date: 06/02/2012
• URL: http://catchenlab.life.illinois.edu/stacks/
• Apolo version: Apolo II
• License: GNU GPL

Dependencies

• GNU GCC 4.7

Installation

1. First download the tar from the main page

$ wget http://catchenlab.life.illinois.edu/stacks/source/stacks-1.44.tar.gz
$ tar -zxvf stacks-1.44.tar.gz

1. configure the makefile

cd stacks-1.44
module load gcc/4.9.4
export CXXFLAGS="-O3 -march=broadwell"
./configure --prefix=/share/apps/stacks/1.44/gcc/4.9.4
make
sudo make install

Module

#%Module1.0#####################################################################
  ##
  ## module stacks/1.44_gcc_4.9.4
  ##
  ## /share/apps/stacks/1.44/gcc/4.9.4     Written by Alejandro Salgado-Gomez
  ##

  proc ModulesHelp { } {
      puts stderr "\tncl/2.1.18_intel-2017_update-1 - sets the Environment for stacks in \
      \n\tthe share directory /share/apps/stacks/1.44/gcc/4.9.4\n"
  }

  module-whatis "\n\n\tSets the environment for using stacks 1.44 \
                 \n\tbuilded with Gcc 4.9.4\n"

  # for Tcl script use only
  set       topdir     /share/apps/stacks/1.44/gcc/4.9.4
  set       version    1.44
  set       sys        x86_64-redhat-linux

  module load gcc/4.9.4

  prepend-path PATH       $topdir/bin

Use mode

module load stacks/1.44_gcc_4.9.4

References

• http://catchenlab.life.illinois.edu/stacks/manual/#install

Author

• Alejandro Salgado Gómez