Table of Contents
RAxML 8.2.9¶
- Installation date: 07/02/2017
- URL: http://sco.h-its.org/exelixis/web/software/raxml/
- Apolo version: Apolo II
- License: GNU GENERAL PUBLIC LICENSE Version 3
Dependencies¶
-Intel Parallel Studio XE 2017 Update 1 (Intel C Compiler and Intel MPI)
Installation¶
- First download the tar from the main page
wget https://github.com/stamatak/standard-RAxML/archive/v8.2.9.tar.gz
tar -zxvf v8.2.9.tar.gz
- compilation config and editing the makefile
cd standard-RAxML-8.2.9
module load impi/2017_update-1
cp Makefile.AVX2.HYBRID.gcc Makefile.AVX2.HYBRID.icc
emacs Makefile.AVX2.HYBRID.icc (Cambiar CC = mpicc por CC = mpiicc)
make -f Makefile.AVX2.HYBRID.icc 2>&1 | tee raxml-make.log
Module¶
#%Module1.0#####################################################################
##
## module raxml/8.2.9_intel_impi-2017_update-1
##
## /share/apps/modules/raxml/8.2.9_intel_impi-2017_update-1 Written by Mateo Gomez-Zuluaga
##
proc ModulesHelp { } {
puts stderr "\traxml/8.2.9_intel-2017_update-1 - sets the Environment for Raxml in \
\n\tthe share directory /share/apps/raxml/8.2.9/intel_impi/2017_update-1\n"
}
module-whatis "\n\n\tSets the environment for using Raxml 8.2.9 \
\n\tbuilded with Intel Parallel Studio XE 2017\n"
# for Tcl script use only
set topdir /share/apps/raxml/8.2.9/intel_impi/2017_update-1
set version 8.2.9
set sys x86_64-redhat-linux
module load impi/2017_update-1
prepend-path PATH $topdir/bin
Usage mode¶
module load raxml/8.2.9_intel_impi-2017_update-1