Table of Contents

• Pyrad
  • Dependencies
  • Installation
  • Use mode
  • References
  • Author

Pyrad

• Installation date: 06/02/2012
• URL: http://dereneaton.com/software/pyrad/
• Apolo version: Apolo II
• License: GPLv3

Dependencies

• python
• numpy
• scipy

Installation

1. First download the tar from the main page

$ wget https://github.com/dereneaton/pyrad/archive/3.0.66.tar.gz
$ tar -zxvf 3.0.66.tar.gz

1. Software config

cd pyrad-3.0.66
module load python/2.7.12_intel-2017_update-1
conda create -m -n <nombre proyecto> intelpython2_core python=2
source activate <nombre proyecto>
python setup.py install

Use mode

module load python/2.7.12_intel-2017_update-1
module load vsearch/2.4.0_gcc-4.9.4
module load muscle/3.8.31_gcc-4.9.4
source activate <nombre proyecto>
python
>>> import pyrad

References

• http://dereneaton.com/software/pyrad/

Author

• Alejandro Salgado Gómez