Prinseq-lite 0.20.4

Basic information

Tested on (Requirements)

  • Dependencies to run Prinseq-lite:
    • Perl >= 5.26.1

Installation

  1. We get the Prinseq-lite binary from the official website.

    wget https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz/download
mv download prinseq-lite-0.20.4.tar.gz
tar -xzvf prinseq-lite-0.20.4.tar.gz
cd prinseq-lite-0.20.4

  2. We create the installation folder and copy the script, changing its name

    mkdir -p /share/apps/prinseq-lite/0.20.4/bin
cp prinseq-lite.pl /share/apps/prinseq-lite/0.20.4/bin/prinseq-lite

  3. We assign the execution permissions

    chmod +x /share/apps/prinseq-lite/0.20.4/bin/prinseq-lite

Module

#%Module1.0####################################################################
##
## module load prinseq-lite/0.20.4
##
## /share/apps/modules/prinseq-lite/0.20.4
## Written by Juan David Arcila-Moreno
##

proc ModulesHelp {} {
    global version modroot
    puts stderr "Sets the environment for using prinseq-lite 0.20.4\
        \nin the shared directory \
        \n/share/apps/prinseq-lite/0.20.4\
        \nperl script"
}

module-whatis "(Name________) prinseq-lite"
module-whatis "(Version_____) 0.20.4"
module-whatis "(Compilers___) perl-5.26.1"
module-whatis "(System______) x86_64-redhat-linux"
module-whatis "(Libraries___) "

# for Tcl script use only
set         topdir        /share/apps/prinseq-lite/0.20.4
set         version       0.20.4
set         sys           x86_64-redhat-linux

conflict prinseq-lite
module load perl/5.26.1_gcc-5.5.0


prepend-path    PATH                    $topdir/bin

Mode of Use

module load prinseq-lite
prinseq-lite -h

Authors

  • Juan David Arcila Moreno