0.11.5¶
- Installation date: 01/03/2017
- URL: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
- Apolo version: Apolo II
- License: GNU GENERAL PUBLIC LICENSE, Version 3
Table of Contents
Installation¶
These are the steps to install FastQC:
- Download the latest version of the software (Binaries - zip) (http://www.bioinformatics.babraham.ac.uk/projects/download.html#fastqc):
cd /home/$USER/apps/fastqc/src
wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip
unzip fastqc_v0.11.5.zip
- For installation, the following steps must be done:
cd FastQC
sudo mkdir -p /share/apps/fastqc/0.11.5/bin
sudo mkdir -p /share/apps/fastqc/0.11.5/lib
sudo cp *.jar /share/apps/fastqc/0.11.5/lib/
sudo cp -r uk/ org/ net/ fastqc /share/apps/fastqc/0.11.5/bin/
Module¶
#%Module1.0#####################################################################
##
## module fastqc/0.11.5
##
## /share/apps/modules/fastqc/0.11.5 Written by Mateo Gomez-Zuluaga
##
proc ModulesHelp { } {
puts stderr "\tfastqc/0.11.5 - sets the Environment for FastQC in \
\n\tthe share directory /share/apps/fastqc/0.11.5\n"
}
module-whatis "\n\n\tSets the environment for using FastQC 0.11.5 \
\n\tprecompiled\n"
# for Tcl script use only
set topdir /share/apps/fastqc/0.11.5
set version 0.11.5
set sys x86_64-redhat-linux
conflict fastqc
module load java/jdk-1.8.0_112
prepend-path PATH $topdir/bin
prepend-path CLASSPATH $topdir/lib/cisd-jhdf5.jar
prepend-path CLASSPATH $topdir/lib/jbzip2-0.9.jar
prepend-path CLASSPATH $topdir/lib/sam-1.103.jar
References¶
- INSTALL.txt (file inside .zip)