ARCS 1.1.0

Basic information

Installation

  1. Before compiling and installing ARCS install all its dependencies. After installing all the dependencies run:

    $ git clone https://github.com/bcgsc/arcs.git
$ cd arcs
$ module load gcc/7.4.0
$ module load boost/1.67.0_intel-17.0.1
$ module load sparsehash/2.0.3_intel-19.0.4
$ ./autogen.sh
$ mkdir build && cd build
$ ../configure CFLAGS="-O3 -mavx2" CXXFLAGS="-O3 -mavx2" --prefix=/share/apps/arcs/1.1.0/gcc/7.4.0
$ make -j4 && make check

    Make sure all the checks run correctly. Then install it:

    $ mkdir -p /share/apps/arcs/1.1.0/gcc/7.4.0
$ sudo make install

  2. Create and place the needed module file. Create a file with the following content:

    1.1.0_gcc-7.4.0
    #%Module1.0####################################################################
##
## module load arcs/1.1.0_gcc-7.4.0
##
## /share/apps/modules/arcs/1.1.0_gcc-7.4.0
## Written by Vincent A. Arcila L and Hamilton Tobon Mosquera.
##

proc ModulesHelp {} {
         global version modroot
         puts stderr "Sets the environment for using arcs 1.1.0 \
         \nin the shared directory /share/apps/arcs/1.1.0/gcc/7.4.0 \
         \nbuilt with GCC 7.4.0."
}

module-whatis "(Name________) arcs"
module-whatis "(Version_____) 1.1.0"
module-whatis "(Compilers___) gcc-7.4.0"
module-whatis "(System______) x86_64-redhat-linux"
module-whatis "(Libraries___) "

# for Tcl script use only
set         topdir        /share/apps/arcs/1.1.0/gcc/7.4.0
set         version       1.1.0
set         sys           x86_64-redhat-linux

conflict arcs
module load boost/1.67.0_intel-17.0.1
module load links/1.8.7_gcc-5.4.0_perl-5.26.1
module load sparsehash/2.0.3_intel-19.0.4
 

prepend-path   PATH            $topdir/bin

    Create the needed folder and place it:

    $ sudo mkdir /share/apps/modules/arcs
$ sudo mv 1.1.0_gcc-7.4.0 /share/apps/modules/arcs/

Authors