Contents

SMOKE 4.8.1 Installation

Tested on (Requirements)

  • OS base: Rocky Linux (x86_64) :math: boldsymbol{ge} 8.5
  • Compiler: GCC 9.3.0
  • Requirements:
  • GCC = 9.3.0
  • MPICH = 3.4.2
  • Zlib = 1.2.11
  • Curl = 7.77.0
  • Netcdf-c disable netcdf-4 = 4.8.0
  • Netcdf-fortran = 4.5.3
  • Zstd = 1.5.2
  • ioapi = 3.2.1
  • tcsh

Installation

This entry covers the entire process performed for the installation and configuration of SMOKE 4.8.1 with a GCC compiler

Create a directory for SMOKE and download the source code

mkdir SMOKE
cd SMOKE
wget https://github.com/CEMPD/SMOKE/releases/download/SMOKEv481_Jan2021/smoke_install_v481.csh
wget https://github.com/CEMPD/SMOKE/releases/download/SMOKEv481_Jan2021/smoke_v481.Linux2_x86_64ifort.tar.gz
wget https://github.com/CEMPD/SMOKE/releases/download/SMOKEv481_Jan2021/smoke_v481.nctox.data.tar.gz

Install SMOKE

From this poin onwards all the commands given have to be executed with tcsh, since SMOKE only works with tcsh.

Set your SMK_HOME directory for the installation and load libraries.

setenv SMK_HOME $cwd

module load gcc/9.3.0
module load mpich/3.4.2_gcc-9.3.0
module load zlib/1.2.11_gcc-9.3.0
module load curl/7.77.0_gcc-9.3.0
module load netcdf-fortran/4.5.3_gcc-9.3.0_disable-netcdf-4

unzip all files with the provided script.

source smoke_install_v481.csh

The script will point the possible problems that may arise.

Create the ioapi folder to make the symbolic link to the already compiled ioapi.

cd subsys

mkdir -p ioapi/ioapi

cd ioapi/ioapi

ln -s /home/<user>/ioapi/ioapi/* .

After linking the ioapi folder, we need to link all the files in the Linux2_x86_64gfort folder.

mkdir $SMK_HOME/subsys/ioapi/Linux2_x86_64gfort/

cd $SMK_HOME/subsys/ioapi/Linux2_x86_64gfort/

ln -s /home/<user>/ioapi/Linux2_x86_64gfort/* .

After creating the links change the line 25 in of the file in the following path $SMK_HOME/subsys/smoke/assigns/ASSIGNS.nctox.cmaq.cb05_soa.us12-nc

vim $SMK_HOME/subsys/smoke/assigns/ASSIGNS.nctox.cmaq.cb05_soa.us12-nc

Change

setenv BIN    Linux2_x86_64ifort

to

setenv BIN    Linux2_x86_64gfort

so that the compilation uses the gfort compiler.

cd $SMK_HOME/subsys/smoke/assigns/

source ASSIGNS.nctox.cmaq.cb05_soa.us12-nc

Now we need to go to the build directory, open the Makeinclude file, comment lines 48 and 53, and uncomment lines 49 and 54

vim $SMK_HOME/subsys/smoke/src/Makeinclude

After that, compile.

cd $SMK_HOME/subsys/smoke/src

make

If everything is correctly configured and the necessary modules are loaded you will get two types of errors

  1. error: enclosing ‘parallel’; With this error you should enter in the file where the error has occurred and before the error line, you should comment the line where it says default none with ‘c……………’.
  2. error:can’t convert CHARACTER(1) TO INTEGER(4) at (1); in the error line where it says LFIP = ‘’ change the quotation marks by a zero.

After correcting the errors all executables should be created, and the compilation should be complete.