BP&P 3.3.0

Basic information

Tested on (Requirements)

  • OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
  • Dependencies:
    • Intel Parallel Studio XE 2017 Update 1 (Intel C Compiler)

Installation

  1. Download the desired version of the software (Source code - tar.gz)

    cd /home/mgomezzul/apps/bpp/intel
wget http://abacus.gene.ucl.ac.uk/software/bpp3.3.tgz
tar -zxvf bpp3.3.tgz

  2. Manual compilation procedure.

    cd bpp3.3/src
module load intel/2017_update-1
echo manual compilation
icc -o bpp -fast bpp.c tools.c -lm
icc -o bpp_sse -fast -DUSE_SSE -msse3 bpp.c tools.c -lm
icc -o bpp_avx -fast -DUSE_AVX -mavx bpp.c tools.c -lm
icc -o MCcoal -DSIMULATION -fast bpp.c tools.c -lm

  3. After compiling BP&P, continue with the following steps:

    sudo mkdir -p /share/apps/bpp/3.3/intel/2017_update-1/bin
sudo cp bpp bpp_sse bpp_avx MCcoal /share/apps/bpp/3.3/intel/2017_update-1/bin

Module

#%Module1.0#####################################################################
##
## module bpp/3.3_intel-2017_update-1
##
## /share/apps/modules/bpp/3.3_intel-2017_update-1     Written by Mateo Gomez-Zuluaga
##

proc ModulesHelp { } {
    puts stderr "\tbpp/3.3_intel-2017_update-1 - sets the Environment for Bpp in \
    \n\tthe share directory /share/apps/bpp/3.3/intel/2017_update-1\n"
}

module-whatis "\n\n\tSets the environment for using Bpp 3.3 \
            \n\tbuilded with Intel Parallel Studio XE 2017\n"

# for Tcl script use only
set       topdir     /share/apps/bpp/3.3/intel/2017_update-1
set       version    3.3
set       sys        x86_64-redhat-linux

module load intel/2017_update-1

prepend-path PATH    $topdir/bin

Usage mode

module load bpp/3.3_intel-2017_update-1

Author

  • Mateo Gómez Zuluaga