BLAST 2.6.0¶
Table of Contents
Basic information¶
- Official Website: https://blast.ncbi.nlm.nih.gov/Blast.cgi
- License: GNU LESSER GENERAL PUBLIC LICENSE Version 2.1
- Installed on: Apolo II and Cronos
- Installation date: 21/02/2017
Tested on (Requirements)¶
- OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
- Dependencies:
- python >= 2.7.11
- libm (by default)
Installation¶
Download the desired version of the software (Source code - tar.gz)
cd /home/mgomezzul/apps/vsearch/gcc wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz tar -zxvf ncbi-blast-2.6.0+-x64-linux.tar.gz
After unpacking blast, continue with the following steps to finish the installation:
cd ncbi-blast-2.6.0+ rm ChangeLog LICENSE ncbi_package_info README sudo mkdir -p /share/apps/ncbi-blast/2.6.0 sudo mv bin /share/apps/ncbi-blast/2.6.0/
Module¶
#%Module1.0##################################################################### ## ## modules ncbi-blast+/2.6.0 ## ## /share/apps/modules/ncbi-blast+/2.6.0_x86_64 Written by Mateo Gomez-Zuluaga ## proc ModulesHelp { } { puts stderr "\n\tThe NCBI Basic Local Alignment Search Tool (BLAST) finds \ \n\tregions of local similarity between sequences in the \ \n\tshare directory /share/apps/ncbi-blast+/2.6.0\n" } module-whatis "\n\tSets the Environment for NCBI-BLAST 2.6.0\n" # for Tcl script use only set topdir /share/apps/ncbi-blast+/2.6.0 set version 2.6.0 set sys x86_64-redhat-linux conflict ncbi-blast+ module load intel/2017_update-1 module load mkl/2017_update-1 module load python/2.7.12_intel-2017_update-1 prepend-path PATH $topdir/bin
Slurm template¶
#!/bin/bash #SBATCH --partition=longjobs #SBATCH --nodes=1 #SBATCH --ntasks-per-node=32 #SBATCH --time=1:00:00 #SBATCH --job-name=vsearch #SBATCH -o result_%N_%j.out #SBATCH -e result_%N_%j.err export SBATCH_EXPORT=NONE export OMP_NUM_THREADS=??? module load ncbi-blast/2.6.0_x86_64 xxx