NetCDF 4.7.4

Basic information

Tested on (Requirements)

  • OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
  • Dependencies:
    • Intel Parallel Studio XE Cluster Edition >= 17.0.1
    • hdf5 >= 1.8.19
    • zlib >= 1.2.11
    • szip >= 2.1

Installation

  1. Download the desired version of the software (Source code - tar.gz)

    cd $HOME/apps/netCDF/intel
git clone https://github.com/Unidata/netcdf-c.git

  2. After unpacking NetCDF, continue with the following steps for configuration and compilation:

    $ cd netcdf-c
$ module load hdf5/1.12_intel_19.0.4
$ export LDFLAGS="-L/share/apps/hdf5/1.12/intel-19.0.4/lib"
$ export CPPFLAGS="-I/share/apps/hdf5/1.12/intel-19.0.4/include"
$ ./configure --prefix=/share/apps/netcdf/4.7.4/intel-19.0.4 --build=x86_64-redhat-linux --enable-largefile
$ make 2>&1 | tee netcdf-make.log
$ sudo mkdir -p /share/apps/netcdf/4.5.0/intel-17.0.1
$ sudo make install 2>&1 | tee netcdf-make-install.log

Module

#%Module1.0####################################################################
##
## module load netcdf/4.7.4_intel-19.0.4
##
## /share/apps/modules/netcdf/4.7.4_intel-19.0.4
## Written by Tomas Navarro & Santiago Alzate
##

proc ModulesHelp {} {
     global version modroot
     puts stderr "Sets the environment for using netcdf 4.7.4\
                  \nin the shared directory \
                  \n/share/apps/netcdf/4.7.4/intel-19.0.4 builded with\
                  \nIntel Paralle Studio XE 2019 Update 4 Cluster Edition,\
                  \nzlib-1.2.11, szip-2.1.1, hdf5-1.12"
}

module-whatis "(Name________) netcdf"
module-whatis "(Version_____) 4.7.4"
module-whatis "(Compilers___) intel-19.0.4"
module-whatis "(System______) x86_64-redhat-linux"
module-whatis "(Libraries___) szip-2.1,zlib-1.2.11"

# for Tcl script use only
set         topdir        /share/apps/netcdf/4.7.4/intel-19.0.4
set         version       4.7.4
set         sys           x86_64-redhat-linux

conflict netcdf
module load intel/19.0.4
module load szip/2.1.1_intel_19.0.4
module load zlib/1.2.11_intel_19.0.4
module load hdf5/1.12_intel-19.0.4

#setenv                 NETCDF                  $topdir

prepend-path    PATH                    $topdir/bin

prepend-path    LD_LIBRARY_PATH         $topdir/lib
prepend-path    LIBRARY_PATH            $topdir/lib
prepend-path    LD_RUN_PATH             $topdir/lib

prepend-path    C_INCLUDE_PATH          $topdir/include
prepend-path    CXX_INCLUDE_PATH        $topdir/include
prepend-path    CPLUS_INCLUDE_PATH      $topdir/include

prepend-path    PKG_CONFIG_PATH         $topdir/lib/pkgconfig

prepend-path    MANPATH                 $topdir/share/man

Mode Of Use

module load netcdf/4.7.4_intel-19.0.4

Author

  • Tomas David Navarro
  • Santiago Alzate Cardona