NetCDF 4.5.0

Basic information

Tested on (Requirements)

  • OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
  • Dependencies:
    • Intel Parallel Studio XE Cluster Edition >= 17.0.1
    • hdf5 >= 1.8.19
    • zlib >= 1.2.11
    • szip >= 2.1

Installation

  1. Download the desired version of the software (Source code - tar.gz)

    cd /home/mgomezzul/apps/netCDF/intel
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.5.0.tar.gz
tar -xvf netcdf-4.5.0.tar.gz

  2. After unpacking NetCDF, continue with the following steps for configuration and compilation:

    cd netcdf-c-4.5.0
module unload slurm
module load hdf5/1.8.19_intel-2017_update-1
./configure --prefix=/share/apps/netcdf/4.5.0/intel-17.0.1 --build=x86_64-redhat-linux 2>&1 | tee netcdf-conf.log
make 2>&1 | tee netcdf-make.log
sudo mkdir -p /share/apps/netcdf/4.5.0/intel-17.0.1
sudo chown -R mgomezzul.apolo /share/apps/netcdf/4.5.0/intel-17.0.1
make install 2>&1 | tee netcdf-make-install.log
sudo chown -R root.root /share/apps/netcdf/4.5.0/intel-17.0.1

Module

#%Module1.0####################################################################
##
## module load netcdf/4.5.0_intel-17.0.1
##
## /share/apps/modules/netcdf/4.5.0_intel-17.0.1
## Written by Mateo Gómez-Zuluaga
##

proc ModulesHelp {} {
    global version modroot
    puts stderr "Sets the environment for using netcdf 4.5.0\
        \nin the shared directory \
        \n/share/apps/netcdf/4.5.0/intel-17.0.1 builded with\
        \nIntel Paralle Studio XE 2017 Update 1 Cluster Edition,\
        \nzlib-1.2.11, szip-2.1, hdf5-1.8.19 and libtools-2.4.6."
}

module-whatis "(Name________) netcdf"
module-whatis "(Version_____) 4.5.0"
module-whatis "(Compilers___) intel-17.0.1"
module-whatis "(System______) x86_64-redhat-linux"
module-whatis "(Libraries___) libtools-2.4.6,szip-2.1,zlib-1.2.11"

# for Tcl script use only
set         topdir        /share/apps/netcdf/4.5.0/intel-17.0.1
set         version       4.5.0
set         sys           x86_64-redhat-linux

conflict netcdf
module load intel/2017_update-1
module load szip/2.1_intel-2017_update-1
module load zlib/1.2.11_intel-2017_update-1
module load libtool/2.4.6_intel-17.0.1
module load hdf5/1.8.19_intel-2017_update-1

prepend-path    PATH                    $topdir/bin

prepend-path    LD_LIBRARY_PATH         $topdir/lib
prepend-path    LIBRARY_PATH            $topdir/lib
prepend-path    LD_RUN_PATH             $topdir/lib

prepend-path    C_INCLUDE_PATH          $topdir/include
prepend-path    CXX_INCLUDE_PATH        $topdir/include
prepend-path    CPLUS_INCLUDE_PATH      $topdir/include

prepend-path    PKG_CONFIG_PATH         $topdir/lib/pkgconfig

prepend-path    MANPATH                 $topdir/share/man

Use

TO-DO

Author

  • Mateo Gómez Zuluaga