Hdf5 1.8.19

Basic information

Tested on (Requirements)

  • OS base: CentOS (x86_64) \(\boldsymbol{\ge}\) 6.6 (Rocks 6.2)
  • Dependencies:
    • Intel Parallel Studio XE Cluster Edition >= 17.0.1
    • zlib >= 1.2.11
    • szip >= 2.1

Installation

  1. Download the desired version of the software (Source code - tar.gz)

    cd /home/mgomezzul/apps/hdf5/intel
wget https://support.hdfgroup.org/ftp/HDF5/current18/src/hdf5-1.8.19.tar
tar -xvf hdf5-1.8.19.tar

  2. After unpacking HDF5, continue with the following steps for configuration and compilation:

    cd hdf5-1.8.19
module unload slurm
module load intel/2017_update-1 zlib/1.2.11_intel-2017_update-1 szip/2.1_intel-2017_update-1
./configure --prefix=/share/apps/hdf5/1.8.19/intel-2017_update-1 --build=x86_64-redhat-linux --enable-fortran --enable-cxx --with-zlib=/share/apps/zlib/1.2.11 --with-szlib=/share/apps/szip/2.1/intel-2017_update-1 2>&1 | tee hdf5-conf.log
make 2>&1 | tee hdf5-make.log
sudo mkdir -p /share/apps/hdf5/1.8.19/intel-2017_update-1
sudo chown -R mgomezzul.apolo /share/apps/hdf5/1.8.19/intel-2017_update-1
make install 2>&1 | tee hdf5-make-install.log
sudo chown -R root.root /share/apps/hdf5/1.8.19/intel-2017_update-1

Module

#%Module1.0####################################################################
##
## module load hdf5/1.8.19_intel-2017_update-1
##
## /share/apps/modules/hdf5/1.8.19_intel-2017_update-1
## Written by Mateo Gómez-Zuluaga
##

proc ModulesHelp {} {
    global version modroot
    puts stderr "Sets the environment for using hdf5 1.8.19\
        \nin the shared directory /share/apps/hdf5/1.8.19/intel-2017_update-1\
        \nbuilded with intel-17.0.1."
}

module-whatis "(Name________) hdf5"
module-whatis "(Version_____) 1.8.19"
module-whatis "(Compilers___) intel-17.0.1"
module-whatis "(System______) x86_64-redhat-linux"
module-whatis "(Libraries___) zlib, szip"

# for Tcl script use only
set         topdir        /share/apps/hdf5/1.8.19/intel-2017_update-1
set         version       1.8.19
set         sys           x86_64-redhat-linux

conflict hdf5
module load intel/2017_update-1
module load szip/2.1_intel-2017_update-1
module load zlib/1.2.11_intel-2017_update-1


prepend-path    PATH                    $topdir/bin

prepend-path    LD_LIBRARY_PATH         $topdir/lib
prepend-path    LIBRARY_PATH            $topdir/lib
prepend-path    LD_RUN_PATH             $topdir/lib

prepend-path    C_INCLUDE_PATH          $topdir/include
prepend-path    CXX_INCLUDE_PATH        $topdir/include
prepend-path    CPLUS_INCLUDE_PATH      $topdir/include

Use

TO-DO

Author

  • Mateo Gómez Zuluaga